May 4, 2023 · I think my problem was that I tried to use both the Greengenes2 package and qiime2 in tandem to train my own classifier. When I just used Qiime2 ...
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May 4, 2023 · Hi Alex,. The non-v4-16s step is performing closed reference clustering against the backbone, so it isn't unusual for the number of features ...
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Jan 23, 2023 · ASV table and Taxonomy table have different formats with greengenes2 · What type of database to use for q2-fragment-insertion · gregcaporaso ...
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Apr 6, 2023 · Hello! I'm using the new greengenes2 plugin with qiime2-2023.2 to process v4 microbiome data. Data have gone through demux and denoise ...
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Jan 25, 2023 · I was able to export the full length sequences and the taxonomy from the .qza format to regular FASTA/.tsv files (using the qiime tools export ...
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Aug 11, 2023 · Good afternoon! I am using Qiime2 in a conda env and ran the beta-rarefaction plug-in: qiime diversity beta-rarefaction --i-table ...
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A seed taxonomy is derived using the mappings from the Web of Life to GTDB. This taxonomy is then augmented using information from the Living Tree Project when ...
Jan 23, 2023 · QIIME 2 2023.2 is now available! ASV table and Taxonomy table have different formats with greengenes2 · Greengenes2 database methods, which one ...
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